Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.06■□□□□ 0.48
CXCL1P09341 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC18.06■□□□□ 0.48
CXCL1P09341 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL1P09341 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CXCL1P09341 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
CXCL1P09341 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CXCL1P09341 AC127496.7-201ENST00000625110 1798 ntBASIC18.05■□□□□ 0.48
CXCL1P09341 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL1P09341 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CXCL1P09341 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CXCL1P09341 SUZ12P1-203ENST00000578195 985 ntBASIC18.04■□□□□ 0.48
CXCL1P09341 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CXCL1P09341 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL1P09341 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL1P09341 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CXCL1P09341 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CXCL1P09341 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL1P09341 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL1P09341 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL1P09341 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL1P09341 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CXCL1P09341 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL1P09341 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL1P09341 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL1P09341 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL1P09341 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL1P09341 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CXCL1P09341 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 FOXO3B-201ENST00000395675 1928 ntBASIC18.02■□□□□ 0.48
CXCL1P09341 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL1P09341 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.02■□□□□ 0.48
CXCL1P09341 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CXCL1P09341 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.02■□□□□ 0.47
CXCL1P09341 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.01■□□□□ 0.47
CXCL1P09341 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CXCL1P09341 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.01■□□□□ 0.47
CXCL1P09341 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CXCL1P09341 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL1P09341 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC18.01■□□□□ 0.47
CXCL1P09341 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL1P09341 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.01■□□□□ 0.47
CXCL1P09341 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL1P09341 AC110285.7-201ENST00000624417 1536 ntBASIC18.01■□□□□ 0.47
CXCL1P09341 DUSP8P3-201ENST00000399571 1760 ntBASIC18.01■□□□□ 0.47
CXCL1P09341 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CXCL1P09341 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CXCL1P09341 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL1P09341 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL1P09341 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.01■□□□□ 0.47
CXCL1P09341 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18■□□□□ 0.47
CXCL1P09341 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CXCL1P09341 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CXCL1P09341 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18■□□□□ 0.47
CXCL1P09341 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
CXCL1P09341 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CXCL1P09341 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CXCL1P09341 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CXCL1P09341 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CXCL1P09341 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18■□□□□ 0.47
CXCL1P09341 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18■□□□□ 0.47
CXCL1P09341 RNF165-205ENST00000588679 2904 ntBASIC17.99■□□□□ 0.47
CXCL1P09341 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CXCL1P09341 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CXCL1P09341 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CXCL1P09341 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CXCL1P09341 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC17.99■□□□□ 0.47
CXCL1P09341 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC17.99■□□□□ 0.47
CXCL1P09341 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CXCL1P09341 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CXCL1P09341 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CXCL1P09341 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
CXCL1P09341 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC17.99■□□□□ 0.47
CXCL1P09341 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
CXCL1P09341 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL1P09341 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL1P09341 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.98■□□□□ 0.47
CXCL1P09341 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL1P09341 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL1P09341 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL1P09341 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL1P09341 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC17.98■□□□□ 0.47
CXCL1P09341 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CXCL1P09341 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.97■□□□□ 0.47
CXCL1P09341 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CXCL1P09341 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.97■□□□□ 0.47
CXCL1P09341 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CXCL1P09341 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.97■□□□□ 0.47
CXCL1P09341 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms