Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
MSH4O15457 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
MSH4O15457 Z92544.1-202ENST00000571933 1220 ntBASIC26.4■■□□□ 1.82
MSH4O15457 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
MSH4O15457 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
MSH4O15457 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.39■■□□□ 1.82
MSH4O15457 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH4O15457 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH4O15457 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.39■■□□□ 1.82
MSH4O15457 AF131216.4-201ENST00000638924 1588 ntBASIC26.39■■□□□ 1.82
MSH4O15457 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH4O15457 OR2A1-AS1-204ENST00000470435 602 ntBASIC26.39■■□□□ 1.82
MSH4O15457 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.39■■□□□ 1.82
MSH4O15457 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
MSH4O15457 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.39■■□□□ 1.82
MSH4O15457 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
MSH4O15457 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
MSH4O15457 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH4O15457 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH4O15457 HES6-204ENST00000409182 863 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH4O15457 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.38■■□□□ 1.81
MSH4O15457 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
MSH4O15457 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH4O15457 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH4O15457 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.37■■□□□ 1.81
MSH4O15457 BX664725.1-201ENST00000438252 379 ntBASIC26.37■■□□□ 1.81
MSH4O15457 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.37■■□□□ 1.81
MSH4O15457 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
MSH4O15457 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.36■■□□□ 1.81
MSH4O15457 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
MSH4O15457 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
MSH4O15457 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
MSH4O15457 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
MSH4O15457 AC021242.3-201ENST00000607598 1377 ntBASIC26.35■■□□□ 1.81
MSH4O15457 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
MSH4O15457 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
MSH4O15457 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26.34■■□□□ 1.81
MSH4O15457 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH4O15457 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH4O15457 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
MSH4O15457 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH4O15457 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH4O15457 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
MSH4O15457 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.8
MSH4O15457 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
MSH4O15457 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.33■■□□□ 1.8
MSH4O15457 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.32■■□□□ 1.8
MSH4O15457 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.32■■□□□ 1.8
MSH4O15457 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
MSH4O15457 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
MSH4O15457 GUSBP5-201ENST00000418136 578 ntBASIC26.32■■□□□ 1.8
MSH4O15457 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.32■■□□□ 1.8
MSH4O15457 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
MSH4O15457 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.32■■□□□ 1.8
MSH4O15457 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
MSH4O15457 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
MSH4O15457 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
MSH4O15457 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
MSH4O15457 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH4O15457 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH4O15457 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.31■■□□□ 1.8
MSH4O15457 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.31■■□□□ 1.8
MSH4O15457 KRT125P-201ENST00000546827 989 ntBASIC26.31■■□□□ 1.8
MSH4O15457 MIR4787-201ENST00000607364 84 ntBASIC26.31■■□□□ 1.8
MSH4O15457 AC138932.3-201ENST00000567634 1902 ntBASIC26.31■■□□□ 1.8
MSH4O15457 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH4O15457 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
MSH4O15457 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
MSH4O15457 AC142381.3-201ENST00000568208 1670 ntBASIC26.3■■□□□ 1.8
MSH4O15457 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH4O15457 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.29■■□□□ 1.8
MSH4O15457 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
MSH4O15457 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH4O15457 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.29■■□□□ 1.8
MSH4O15457 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.29■■□□□ 1.8
MSH4O15457 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
MSH4O15457 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.29■■□□□ 1.8
MSH4O15457 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.29■■□□□ 1.8
MSH4O15457 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH4O15457 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH4O15457 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH4O15457 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH4O15457 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.28■■□□□ 1.8
MSH4O15457 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC26.28■■□□□ 1.8
MSH4O15457 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH4O15457 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH4O15457 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.28■■□□□ 1.8
MSH4O15457 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
MSH4O15457 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.28■■□□□ 1.8
MSH4O15457 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH4O15457 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH4O15457 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH4O15457 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
MSH4O15457 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
MSH4O15457 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC26.27■■□□□ 1.8
MSH4O15457 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.27■■□□□ 1.8
MSH4O15457 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.27■■□□□ 1.8
MSH4O15457 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH4O15457 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
MSH4O15457 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms