Protein–RNA interactions for Protein: O15041

SEMA3E, Semaphorin-3E, humanhuman

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3EO15041 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC28.4■■■□□ 2.14
SEMA3EO15041 CLTA-210ENST00000540080 989 ntTSL 2 BASIC28.4■■■□□ 2.14
SEMA3EO15041 MIR6724-1-201ENST00000616420 92 ntBASIC28.4■■■□□ 2.14
SEMA3EO15041 MIR6724-2-201ENST00000616483 92 ntBASIC28.4■■■□□ 2.14
SEMA3EO15041 MIR6724-4-201ENST00000617390 92 ntBASIC28.4■■■□□ 2.14
SEMA3EO15041 MIR6724-3-201ENST00000622482 92 ntBASIC28.4■■■□□ 2.14
SEMA3EO15041 EXOG-217ENST00000630638 197 ntTSL 5 BASIC28.4■■■□□ 2.14
SEMA3EO15041 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SEMA3EO15041 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC28.39■■■□□ 2.14
SEMA3EO15041 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC28.39■■■□□ 2.14
SEMA3EO15041 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.39■■■□□ 2.14
SEMA3EO15041 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
SEMA3EO15041 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.13
SEMA3EO15041 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
SEMA3EO15041 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SEMA3EO15041 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SEMA3EO15041 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SEMA3EO15041 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SEMA3EO15041 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.37■■■□□ 2.13
SEMA3EO15041 LSM4-201ENST00000252816 986 ntTSL 2 BASIC28.37■■■□□ 2.13
SEMA3EO15041 LBH-205ENST00000407930 756 ntTSL 2 BASIC28.37■■■□□ 2.13
SEMA3EO15041 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC28.37■■■□□ 2.13
SEMA3EO15041 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC28.37■■■□□ 2.13
SEMA3EO15041 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC28.37■■■□□ 2.13
SEMA3EO15041 SNX5-217ENST00000606557 1087 ntBASIC28.36■■■□□ 2.13
SEMA3EO15041 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC28.36■■■□□ 2.13
SEMA3EO15041 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.36■■■□□ 2.13
SEMA3EO15041 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC28.35■■■□□ 2.13
SEMA3EO15041 SLC6A10P-202ENST00000431994 2058 ntBASIC28.35■■■□□ 2.13
SEMA3EO15041 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SEMA3EO15041 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
SEMA3EO15041 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC28.34■■■□□ 2.13
SEMA3EO15041 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SEMA3EO15041 AC008406.3-201ENST00000620001 1374 ntBASIC28.34■■■□□ 2.13
SEMA3EO15041 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
SEMA3EO15041 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.33■■■□□ 2.13
SEMA3EO15041 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.33■■■□□ 2.13
SEMA3EO15041 MIR3621-201ENST00000580529 85 ntBASIC28.33■■■□□ 2.13
SEMA3EO15041 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC28.33■■■□□ 2.13
SEMA3EO15041 AL117332.1-201ENST00000622628 974 ntBASIC28.33■■■□□ 2.13
SEMA3EO15041 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC28.32■■■□□ 2.12
SEMA3EO15041 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
SEMA3EO15041 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
SEMA3EO15041 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC28.32■■■□□ 2.12
SEMA3EO15041 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
SEMA3EO15041 MIR6722-201ENST00000617286 78 ntBASIC28.32■■■□□ 2.12
SEMA3EO15041 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SEMA3EO15041 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC28.31■■■□□ 2.12
SEMA3EO15041 LSM7-203ENST00000585409 512 ntTSL 2 BASIC28.31■■■□□ 2.12
SEMA3EO15041 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SEMA3EO15041 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC28.31■■■□□ 2.12
SEMA3EO15041 MIR6089-201ENST00000616698 64 ntBASIC28.31■■■□□ 2.12
SEMA3EO15041 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC28.31■■■□□ 2.12
SEMA3EO15041 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
SEMA3EO15041 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
SEMA3EO15041 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
SEMA3EO15041 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC28.3■■■□□ 2.12
SEMA3EO15041 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
SEMA3EO15041 RPP21-222ENST00000433076 577 ntTSL 2 BASIC28.29■■■□□ 2.12
SEMA3EO15041 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SEMA3EO15041 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
SEMA3EO15041 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SEMA3EO15041 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SEMA3EO15041 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SEMA3EO15041 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.28■■■□□ 2.12
SEMA3EO15041 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC28.28■■■□□ 2.12
SEMA3EO15041 CD72-202ENST00000378430 585 ntTSL 3 BASIC28.27■■■□□ 2.12
SEMA3EO15041 SRR-208ENST00000576848 588 ntTSL 4 BASIC28.27■■■□□ 2.12
SEMA3EO15041 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC28.26■■■□□ 2.12
SEMA3EO15041 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SEMA3EO15041 PEMT-206ENST00000435340 960 ntTSL 5 BASIC28.26■■■□□ 2.11
SEMA3EO15041 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC28.26■■■□□ 2.11
SEMA3EO15041 AL356740.2-201ENST00000601559 647 ntBASIC28.26■■■□□ 2.11
SEMA3EO15041 CEBPA-AS1-201ENST00000592982 2198 ntBASIC28.26■■■□□ 2.11
SEMA3EO15041 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
SEMA3EO15041 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SEMA3EO15041 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC28.25■■■□□ 2.11
SEMA3EO15041 AC131281.2-201ENST00000520478 145 ntBASIC28.25■■■□□ 2.11
SEMA3EO15041 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC28.25■■■□□ 2.11
SEMA3EO15041 TFPT-201ENST00000391757 774 ntTSL 5 BASIC28.24■■■□□ 2.11
SEMA3EO15041 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
SEMA3EO15041 CLTA-206ENST00000466396 695 ntTSL 2 BASIC28.24■■■□□ 2.11
SEMA3EO15041 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC28.24■■■□□ 2.11
SEMA3EO15041 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC28.24■■■□□ 2.11
SEMA3EO15041 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
SEMA3EO15041 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC28.24■■■□□ 2.11
SEMA3EO15041 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SEMA3EO15041 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC28.24■■■□□ 2.11
SEMA3EO15041 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SEMA3EO15041 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC28.23■■■□□ 2.11
SEMA3EO15041 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.23■■■□□ 2.11
SEMA3EO15041 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC28.23■■■□□ 2.11
SEMA3EO15041 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC28.23■■■□□ 2.11
SEMA3EO15041 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
SEMA3EO15041 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.23■■■□□ 2.11
SEMA3EO15041 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
SEMA3EO15041 AC004448.1-201ENST00000458332 883 ntBASIC28.23■■■□□ 2.11
SEMA3EO15041 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.23■■■□□ 2.11
SEMA3EO15041 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SEMA3EO15041 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms