Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-1A0A0B4J248 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 ECEL1P1-201ENST00000373592 1742 ntBASIC18.29■□□□□ 0.52
TRAV1-1A0A0B4J248 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 C1orf229-201ENST00000623686 2258 ntBASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-1A0A0B4J248 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV1-1A0A0B4J248 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV1-1A0A0B4J248 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV1-1A0A0B4J248 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV1-1A0A0B4J248 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRAV1-1A0A0B4J248 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV1-1A0A0B4J248 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.27■□□□□ 0.51
TRAV1-1A0A0B4J248 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV1-1A0A0B4J248 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.27■□□□□ 0.51
TRAV1-1A0A0B4J248 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 GUSBP5-202ENST00000510805 1989 ntBASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-1A0A0B4J248 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 AL359504.2-201ENST00000605506 1601 ntBASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TRAV1-1A0A0B4J248 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 AC136428.2-201ENST00000563187 214 ntBASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV1-1A0A0B4J248 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.23■□□□□ 0.51
TRAV1-1A0A0B4J248 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV1-1A0A0B4J248 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.22■□□□□ 0.51
TRAV1-1A0A0B4J248 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAV1-1A0A0B4J248 DUSP8P3-201ENST00000399571 1760 ntBASIC18.22■□□□□ 0.51
TRAV1-1A0A0B4J248 HLA-L-211ENST00000482052 1765 ntBASIC18.22■□□□□ 0.51
TRAV1-1A0A0B4J248 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV1-1A0A0B4J248 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms