Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP1Q96SZ6 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP1Q96SZ6 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP1Q96SZ6 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AL512384.1-201ENST00000406683 331 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AC134915.1-201ENST00000426461 574 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AL162726.2-201ENST00000438986 1017 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 ENPP7P5-201ENST00000541031 1031 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AL049840.4-201ENST00000602422 811 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 WFDC1-204ENST00000613603 549 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AL033527.5-201ENST00000641382 801 ntBASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP1Q96SZ6 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AC026691.1-201ENST00000602502 2017 ntBASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 INTS4P2-202ENST00000614726 2019 ntBASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP1Q96SZ6 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.29■□□□□ 0.2
CDK5RAP1Q96SZ6 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP1Q96SZ6 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP1Q96SZ6 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP1Q96SZ6 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms