Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LMX1AQ8TE12 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 MSTO2P-201ENST00000314835 1709 ntBASIC15.29■□□□□ 0.04
LMX1AQ8TE12 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AL133267.1-201ENST00000398220 340 ntBASIC15.29■□□□□ 0.04
LMX1AQ8TE12 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AC012441.1-201ENST00000446669 685 ntBASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AC026410.3-201ENST00000514280 936 ntBASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AP001582.1-201ENST00000525856 295 ntBASIC15.29■□□□□ 0.04
LMX1AQ8TE12 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LMX1AQ8TE12 AC018695.7-201ENST00000624587 2492 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 DRD5P1-201ENST00000456605 1438 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 AC092933.1-201ENST00000393644 945 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 RPL7P3-201ENST00000441388 714 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 FTH1P14-201ENST00000482930 551 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 MIR4313-201ENST00000580760 101 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 AC093813.1-201ENST00000605066 256 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 AC107373.2-201ENST00000607735 490 ntBASIC15.28■□□□□ 0.04
LMX1AQ8TE12 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1AQ8TE12 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1AQ8TE12 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms