Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 FOXO1B-201ENST00000504678 1527 ntBASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AC091812.2-201ENST00000619081 385 ntBASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 KRT8P37-201ENST00000451609 1420 ntBASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SPDYE11-202ENST00000450699 704 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 PHKG1P2-201ENST00000457537 863 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 IGHV3-62-201ENST00000520057 340 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AP000842.3-202ENST00000569238 1080 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SPDYE9P-201ENST00000570642 692 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AC140113.2-201ENST00000604370 208 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AC026120.1-201ENST00000611536 926 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SPDYE10P-202ENST00000612005 668 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SPDYE8P-202ENST00000612377 668 ntBASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC54Q8NEL0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms