Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 MIR661-201ENST00000384842 89 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 FAM207CP-201ENST00000443486 507 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 MEIS3P1-201ENST00000495167 958 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 SERBP1P5-201ENST00000510079 1181 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 AC138969.3-201ENST00000546612 1459 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 AC138932.2-201ENST00000548268 1459 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 AC126755.4-201ENST00000549796 1459 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.14■□□□□ 0.17
RTL3Q8N8U3 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RTL3Q8N8U3 AC090616.6-203ENST00000579186 1945 ntBASIC16.13■□□□□ 0.17
RTL3Q8N8U3 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 SPTLC1P1-201ENST00000447199 261 ntBASIC16.13■□□□□ 0.17
RTL3Q8N8U3 DOC2GP-202ENST00000514950 1163 ntBASIC16.13■□□□□ 0.17
RTL3Q8N8U3 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RTL3Q8N8U3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 AL133267.1-201ENST00000398220 340 ntBASIC16.12■□□□□ 0.17
RTL3Q8N8U3 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 AC015910.1-201ENST00000579400 975 ntBASIC16.12■□□□□ 0.17
RTL3Q8N8U3 RN7SL204P-201ENST00000582831 262 ntBASIC16.12■□□□□ 0.17
RTL3Q8N8U3 AL158212.4-201ENST00000624062 1286 ntBASIC16.12■□□□□ 0.17
RTL3Q8N8U3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RTL3Q8N8U3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms