Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC60Q8IWA6 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 ACTG1P3-201ENST00000431775 1114 ntBASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 TDH-203ENST00000531764 1110 ntBASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 ENPP7P5-201ENST00000541031 1031 ntBASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 RAB43P1-201ENST00000561790 589 ntBASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 AL008721.1-201ENST00000609964 604 ntBASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 AC009090.5-201ENST00000624886 2285 ntBASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC60Q8IWA6 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AC127383.1-201ENST00000444697 1800 ntBASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 CROCCP4-201ENST00000457096 498 ntBASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AL512343.1-201ENST00000605837 169 ntBASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 MSTO2P-201ENST00000314835 1709 ntBASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC60Q8IWA6 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms