Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 C8orf49-201ENST00000525043 1968 ntBASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 HMGN1P19-201ENST00000436976 333 ntBASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 AC009407.1-201ENST00000568958 598 ntBASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 AC025048.3-201ENST00000590609 569 ntBASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 AC005702.4-201ENST00000618393 416 ntBASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.61□□□□□ -0.07
NUP54Q7Z3B4 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 TSPY26P-202ENST00000565928 3884 ntBASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 Z97205.2-201ENST00000564697 1639 ntBASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AC136604.1-201ENST00000418535 575 ntBASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 BCRP1-201ENST00000444246 691 ntBASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AC044860.1-202ENST00000559481 777 ntBASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 AL162727.3-201ENST00000635661 2787 ntBASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms