Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AC114501.1-201ENST00000445949 172 ntBASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AL133466.1-201ENST00000447582 150 ntBASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 CTBP2P4-201ENST00000513884 920 ntBASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 AC018892.3-201ENST00000623986 2499 ntBASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.93■□□□□ 0.62
CCDC88AQ3V6T2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 AC100850.1-201ENST00000506768 649 ntBASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 RNA5SP486-201ENST00000515961 83 ntBASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 AL353726.2-201ENST00000623259 884 ntBASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 CU633904.3-201ENST00000624042 1029 ntBASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 RGS5-214ENST00000429865 754 ntTSL 3 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 AP005019.2-201ENST00000615104 511 ntBASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 AC006480.2-201ENST00000609770 1337 ntBASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC88AQ3V6T2 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms