Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 AC104794.3-201ENST00000566840 1248 ntBASIC14.28□□□□□ -0.12
FOXF1Q12946 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXF1Q12946 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXF1Q12946 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.28□□□□□ -0.12
FOXF1Q12946 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXF1Q12946 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXF1Q12946 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXF1Q12946 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXF1Q12946 AC009090.5-201ENST00000624886 2285 ntBASIC14.27□□□□□ -0.12
FOXF1Q12946 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXF1Q12946 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXF1Q12946 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXF1Q12946 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXF1Q12946 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXF1Q12946 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXF1Q12946 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXF1Q12946 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXF1Q12946 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXF1Q12946 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.27□□□□□ -0.12
FOXF1Q12946 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXF1Q12946 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.27□□□□□ -0.12
FOXF1Q12946 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.27□□□□□ -0.12
FOXF1Q12946 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.27□□□□□ -0.13
FOXF1Q12946 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
FOXF1Q12946 AC015922.1-201ENST00000421102 1152 ntBASIC14.27□□□□□ -0.13
FOXF1Q12946 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
FOXF1Q12946 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXF1Q12946 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXF1Q12946 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXF1Q12946 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXF1Q12946 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
FOXF1Q12946 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
FOXF1Q12946 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXF1Q12946 SPCS2P1-201ENST00000561636 679 ntBASIC14.27□□□□□ -0.13
FOXF1Q12946 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXF1Q12946 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXF1Q12946 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXF1Q12946 AJ011932.1-201ENST00000621707 465 ntBASIC14.27□□□□□ -0.13
FOXF1Q12946 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
FOXF1Q12946 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXF1Q12946 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
FOXF1Q12946 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
FOXF1Q12946 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXF1Q12946 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXF1Q12946 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXF1Q12946 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXF1Q12946 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
FOXF1Q12946 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXF1Q12946 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXF1Q12946 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXF1Q12946 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXF1Q12946 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXF1Q12946 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXF1Q12946 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.26□□□□□ -0.13
FOXF1Q12946 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXF1Q12946 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXF1Q12946 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.26□□□□□ -0.13
FOXF1Q12946 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXF1Q12946 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.26□□□□□ -0.13
FOXF1Q12946 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXF1Q12946 AC004790.1-201ENST00000612686 536 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms