Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
COL4A4P53420 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.51■□□□□ 0.23
COL4A4P53420 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.51■□□□□ 0.23
COL4A4P53420 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A4P53420 RNA5SP486-201ENST00000515961 83 ntBASIC16.51■□□□□ 0.23
COL4A4P53420 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A4P53420 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
COL4A4P53420 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A4P53420 AL133499.1-201ENST00000596207 608 ntBASIC16.51■□□□□ 0.23
COL4A4P53420 MIR7845-201ENST00000618396 99 ntBASIC16.51■□□□□ 0.23
COL4A4P53420 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
COL4A4P53420 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.51■□□□□ 0.23
COL4A4P53420 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
COL4A4P53420 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL4A4P53420 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL4A4P53420 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A4P53420 AC069218.1-201ENST00000435269 762 ntBASIC16.5■□□□□ 0.23
COL4A4P53420 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A4P53420 PPY2P-201ENST00000582808 702 ntBASIC16.5■□□□□ 0.23
COL4A4P53420 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 AL645939.5-201ENST00000606834 243 ntBASIC16.5■□□□□ 0.23
COL4A4P53420 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL4A4P53420 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 AP005117.1-202ENST00000581724 1908 ntBASIC16.5■□□□□ 0.23
COL4A4P53420 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 PCDHA1-201ENST00000378133 2726 ntBASIC16.5■□□□□ 0.23
COL4A4P53420 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A4P53420 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A4P53420 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A4P53420 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A4P53420 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A4P53420 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A4P53420 AF254983.2-201ENST00000612331 135 ntBASIC16.5■□□□□ 0.23
COL4A4P53420 AP005019.2-201ENST00000615104 511 ntBASIC16.5■□□□□ 0.23
COL4A4P53420 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A4P53420 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL4A4P53420 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A4P53420 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.49■□□□□ 0.23
COL4A4P53420 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL4A4P53420 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL4A4P53420 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A4P53420 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.49■□□□□ 0.23
COL4A4P53420 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.49■□□□□ 0.23
COL4A4P53420 RN7SL181P-201ENST00000462921 277 ntBASIC16.49■□□□□ 0.23
COL4A4P53420 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
COL4A4P53420 IQSEC3P1-201ENST00000538799 536 ntBASIC16.49■□□□□ 0.23
COL4A4P53420 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
COL4A4P53420 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.48■□□□□ 0.23
COL4A4P53420 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A4P53420 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.48■□□□□ 0.23
COL4A4P53420 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL4A4P53420 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms