Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 TMBIM7P-203ENST00000641617 1718 ntBASIC16.29■□□□□ 0.2
NEK3P51956 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.29■□□□□ 0.2
NEK3P51956 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 RPL37AP1-201ENST00000412502 279 ntBASIC16.29■□□□□ 0.2
NEK3P51956 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.29■□□□□ 0.2
NEK3P51956 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.29■□□□□ 0.2
NEK3P51956 MIR4321-201ENST00000592276 80 ntBASIC16.29■□□□□ 0.2
NEK3P51956 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
NEK3P51956 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NEK3P51956 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.28■□□□□ 0.2
NEK3P51956 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.28■□□□□ 0.2
NEK3P51956 AL080243.2-201ENST00000418783 582 ntBASIC16.28■□□□□ 0.2
NEK3P51956 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 FAM207CP-201ENST00000443486 507 ntBASIC16.28■□□□□ 0.2
NEK3P51956 AL139010.1-201ENST00000454878 894 ntBASIC16.28■□□□□ 0.2
NEK3P51956 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.28■□□□□ 0.2
NEK3P51956 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.28■□□□□ 0.2
NEK3P51956 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.28■□□□□ 0.2
NEK3P51956 AC022144.1-201ENST00000602255 1580 ntBASIC16.28■□□□□ 0.2
NEK3P51956 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 AL109954.1-202ENST00000564051 2148 ntBASIC16.28■□□□□ 0.2
NEK3P51956 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.28■□□□□ 0.2
NEK3P51956 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NEK3P51956 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NEK3P51956 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.27■□□□□ 0.2
NEK3P51956 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.27■□□□□ 0.2
NEK3P51956 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 AC087499.5-201ENST00000452760 1342 ntBASIC16.27■□□□□ 0.2
NEK3P51956 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
NEK3P51956 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms