Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CLCN3P51790 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.23■□□□□ 0.35
CLCN3P51790 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.23■□□□□ 0.35
CLCN3P51790 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CLCN3P51790 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLCN3P51790 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLCN3P51790 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 PRAL-201ENST00000624952 3286 ntBASIC17.22■□□□□ 0.35
CLCN3P51790 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.22■□□□□ 0.35
CLCN3P51790 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.22■□□□□ 0.35
CLCN3P51790 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.22■□□□□ 0.35
CLCN3P51790 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CLCN3P51790 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.22■□□□□ 0.35
CLCN3P51790 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.22■□□□□ 0.35
CLCN3P51790 BCRP2-202ENST00000447763 634 ntBASIC17.22■□□□□ 0.35
CLCN3P51790 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.22■□□□□ 0.35
CLCN3P51790 BCRP6-201ENST00000510112 632 ntBASIC17.22■□□□□ 0.35
CLCN3P51790 BCRP7-201ENST00000511549 544 ntBASIC17.22■□□□□ 0.35
CLCN3P51790 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CLCN3P51790 PTP4A1P2-201ENST00000546033 454 ntBASIC17.22■□□□□ 0.35
CLCN3P51790 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.22■□□□□ 0.35
CLCN3P51790 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.22■□□□□ 0.35
CLCN3P51790 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.22■□□□□ 0.35
CLCN3P51790 MIR6775-201ENST00000617557 69 ntBASIC17.22■□□□□ 0.35
CLCN3P51790 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.22■□□□□ 0.35
CLCN3P51790 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.22■□□□□ 0.35
CLCN3P51790 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.22■□□□□ 0.35
CLCN3P51790 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLCN3P51790 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.21■□□□□ 0.35
CLCN3P51790 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CLCN3P51790 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CLCN3P51790 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CLCN3P51790 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.21■□□□□ 0.35
CLCN3P51790 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.21■□□□□ 0.35
CLCN3P51790 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.21■□□□□ 0.35
CLCN3P51790 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CLCN3P51790 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CLCN3P51790 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 KRT43P-201ENST00000434019 910 ntBASIC17.21■□□□□ 0.35
CLCN3P51790 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.21■□□□□ 0.35
CLCN3P51790 AP001889.1-201ENST00000525414 633 ntBASIC17.21■□□□□ 0.35
CLCN3P51790 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.21■□□□□ 0.35
CLCN3P51790 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.21■□□□□ 0.35
CLCN3P51790 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.21■□□□□ 0.35
CLCN3P51790 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.21■□□□□ 0.35
CLCN3P51790 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.21■□□□□ 0.35
CLCN3P51790 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.21■□□□□ 0.35
CLCN3P51790 AL139384.1-201ENST00000612143 3047 ntBASIC17.21■□□□□ 0.35
CLCN3P51790 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.21■□□□□ 0.35
CLCN3P51790 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLCN3P51790 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
CLCN3P51790 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
CLCN3P51790 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
CLCN3P51790 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CLCN3P51790 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
CLCN3P51790 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLCN3P51790 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
CLCN3P51790 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms