Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 OR2K2-202ENST00000374428 1038 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 AL627231.1-201ENST00000394467 1125 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.15■□□□□ 0.5
SCN4AP35499 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SCN4AP35499 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SCN4AP35499 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.15■□□□□ 0.5
SCN4AP35499 AC130709.1-201ENST00000484779 1212 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 AC022616.1-201ENST00000518688 554 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC18.15■□□□□ 0.5
SCN4AP35499 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SCN4AP35499 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.15■□□□□ 0.5
SCN4AP35499 AC007718.1-201ENST00000621078 280 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SCN4AP35499 AC127024.7-201ENST00000625101 200 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.15■□□□□ 0.5
SCN4AP35499 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SCN4AP35499 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SCN4AP35499 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.15■□□□□ 0.5
SCN4AP35499 PRORSD1P-202ENST00000563365 2154 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 RNF216P1-203ENST00000404404 2427 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SCN4AP35499 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SCN4AP35499 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SCN4AP35499 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
SCN4AP35499 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.14■□□□□ 0.5
SCN4AP35499 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.14■□□□□ 0.5
SCN4AP35499 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.14■□□□□ 0.5
SCN4AP35499 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.14■□□□□ 0.5
SCN4AP35499 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.14■□□□□ 0.5
SCN4AP35499 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC18.14■□□□□ 0.5
SCN4AP35499 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.14■□□□□ 0.5
SCN4AP35499 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SCN4AP35499 MEG3_2.1-201ENST00000611456 105 ntBASIC18.14■□□□□ 0.5
SCN4AP35499 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SCN4AP35499 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SCN4AP35499 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SCN4AP35499 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SCN4AP35499 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SCN4AP35499 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SCN4AP35499 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SCN4AP35499 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
SCN4AP35499 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.14■□□□□ 0.49
SCN4AP35499 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.14■□□□□ 0.49
SCN4AP35499 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
SCN4AP35499 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN4AP35499 AL132780.4-201ENST00000624870 1135 ntBASIC18.14■□□□□ 0.49
SCN4AP35499 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.13■□□□□ 0.49
SCN4AP35499 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.13■□□□□ 0.49
SCN4AP35499 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SCN4AP35499 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SCN4AP35499 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.13■□□□□ 0.49
SCN4AP35499 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SCN4AP35499 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SCN4AP35499 AC012362.1-201ENST00000434906 739 ntBASIC18.13■□□□□ 0.49
SCN4AP35499 RPL18AP3-201ENST00000462885 528 ntBASIC18.13■□□□□ 0.49
SCN4AP35499 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN4AP35499 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN4AP35499 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.13■□□□□ 0.49
SCN4AP35499 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.13■□□□□ 0.49
SCN4AP35499 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 Z98259.2-201ENST00000641583 609 ntBASIC18.13■□□□□ 0.49
SCN4AP35499 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
SCN4AP35499 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN4AP35499 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SCN4AP35499 FAM90A2P-201ENST00000511144 1395 ntBASIC18.13■□□□□ 0.49
SCN4AP35499 FAM90A25P-201ENST00000528404 1395 ntBASIC18.13■□□□□ 0.49
SCN4AP35499 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.12■□□□□ 0.49
SCN4AP35499 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.12■□□□□ 0.49
SCN4AP35499 POU5F1P2-201ENST00000521750 823 ntBASIC18.12■□□□□ 0.49
SCN4AP35499 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.12■□□□□ 0.49
SCN4AP35499 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SCN4AP35499 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.12■□□□□ 0.49
SCN4AP35499 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
SCN4AP35499 AC011477.6-201ENST00000604980 1927 ntBASIC18.12■□□□□ 0.49
SCN4AP35499 FAM90A7P-201ENST00000382628 1395 ntBASIC18.12■□□□□ 0.49
SCN4AP35499 FAM90A23P-201ENST00000400136 1395 ntBASIC18.12■□□□□ 0.49
SCN4AP35499 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.12■□□□□ 0.49
SCN4AP35499 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms