Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HLA-DOAP06340 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC18.47■□□□□ 0.55
HLA-DOAP06340 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 ACKR1-201ENST00000368121 1240 ntBASIC18.46■□□□□ 0.55
HLA-DOAP06340 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 AP001582.1-201ENST00000525856 295 ntBASIC18.46■□□□□ 0.55
HLA-DOAP06340 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
HLA-DOAP06340 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HLA-DOAP06340 MSTO2P-201ENST00000314835 1709 ntBASIC18.46■□□□□ 0.55
HLA-DOAP06340 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms