Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
APOBP04114 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC9.56□□□□□ -0.88
APOBP04114 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
APOBP04114 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
APOBP04114 INE2-201ENST00000630399 1874 ntBASIC9.56□□□□□ -0.88
APOBP04114 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 MIR557-201ENST00000385239 98 ntBASIC9.55□□□□□ -0.88
APOBP04114 AC242376.2-201ENST00000619355 883 ntBASIC9.55□□□□□ -0.88
APOBP04114 AC002472.4-201ENST00000641915 272 ntBASIC9.55□□□□□ -0.88
APOBP04114 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC9.55□□□□□ -0.88
APOBP04114 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC9.55□□□□□ -0.88
APOBP04114 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC9.55□□□□□ -0.88
APOBP04114 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC9.55□□□□□ -0.88
APOBP04114 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 RNF165-205ENST00000588679 2904 ntBASIC9.55□□□□□ -0.88
APOBP04114 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 RBM38-204ENST00000371219 760 ntTSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 AC021723.1-201ENST00000486306 515 ntBASIC9.55□□□□□ -0.88
APOBP04114 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC9.55□□□□□ -0.88
APOBP04114 NAMA-206ENST00000605377 509 ntTSL 5 BASIC9.55□□□□□ -0.88
APOBP04114 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC9.55□□□□□ -0.88
APOBP04114 Z98259.2-201ENST00000641583 609 ntBASIC9.55□□□□□ -0.88
APOBP04114 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC9.55□□□□□ -0.88
APOBP04114 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 AC239868.1-201ENST00000369385 493 ntBASIC9.54□□□□□ -0.88
APOBP04114 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 AL645937.2-201ENST00000396808 931 ntBASIC9.54□□□□□ -0.88
APOBP04114 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC9.54□□□□□ -0.88
APOBP04114 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC9.54□□□□□ -0.88
APOBP04114 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC9.54□□□□□ -0.88
APOBP04114 AC026434.2-201ENST00000506094 1078 ntBASIC9.54□□□□□ -0.88
APOBP04114 AC026803.1-201ENST00000569130 274 ntBASIC9.54□□□□□ -0.88
APOBP04114 MIR3677-201ENST00000578964 60 ntBASIC9.54□□□□□ -0.88
APOBP04114 RN7SL163P-201ENST00000583100 276 ntBASIC9.54□□□□□ -0.88
APOBP04114 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC9.54□□□□□ -0.88
APOBP04114 MBLAC2-202ENST00000514906 1936 ntBASIC9.54□□□□□ -0.88
APOBP04114 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC9.54□□□□□ -0.88
APOBP04114 AL157414.3-201ENST00000624276 1954 ntBASIC9.54□□□□□ -0.88
APOBP04114 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 AMT-204ENST00000427987 1646 ntTSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC9.54□□□□□ -0.88
APOBP04114 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 IL9RP3-201ENST00000442856 1674 ntBASIC9.54□□□□□ -0.88
APOBP04114 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC9.54□□□□□ -0.88
APOBP04114 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 RN7SKP175-201ENST00000408472 289 ntBASIC9.54□□□□□ -0.88
APOBP04114 EHF-205ENST00000527935 557 ntTSL 2 BASIC9.54□□□□□ -0.88
APOBP04114 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC9.54□□□□□ -0.88
APOBP04114 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC9.54□□□□□ -0.88
APOBP04114 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC9.54□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms