Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL2A1P02458 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL2A1P02458 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL2A1P02458 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL2A1P02458 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL2A1P02458 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.08■□□□□ 0.48
COL2A1P02458 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL2A1P02458 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL2A1P02458 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
COL2A1P02458 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
COL2A1P02458 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.07■□□□□ 0.48
COL2A1P02458 ELK2AP-201ENST00000392510 1007 ntBASIC18.07■□□□□ 0.48
COL2A1P02458 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.07■□□□□ 0.48
COL2A1P02458 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL2A1P02458 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC18.07■□□□□ 0.48
COL2A1P02458 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC18.07■□□□□ 0.48
COL2A1P02458 AC104306.2-201ENST00000451877 341 ntBASIC18.07■□□□□ 0.48
COL2A1P02458 OARD1-212ENST00000482515 832 ntTSL 2 BASIC18.07■□□□□ 0.48
COL2A1P02458 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC18.07■□□□□ 0.48
COL2A1P02458 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC18.07■□□□□ 0.48
COL2A1P02458 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL2A1P02458 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
COL2A1P02458 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL2A1P02458 AL022328.3-201ENST00000607943 679 ntBASIC18.07■□□□□ 0.48
COL2A1P02458 ZACNP1-201ENST00000612259 710 ntBASIC18.07■□□□□ 0.48
COL2A1P02458 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL2A1P02458 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.07■□□□□ 0.48
COL2A1P02458 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
COL2A1P02458 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL2A1P02458 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC18.07■□□□□ 0.48
COL2A1P02458 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.07■□□□□ 0.48
COL2A1P02458 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.06■□□□□ 0.48
COL2A1P02458 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL2A1P02458 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.06■□□□□ 0.48
COL2A1P02458 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.06■□□□□ 0.48
COL2A1P02458 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL2A1P02458 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC18.06■□□□□ 0.48
COL2A1P02458 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL2A1P02458 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL2A1P02458 RGS5-214ENST00000429865 754 ntTSL 3 BASIC18.06■□□□□ 0.48
COL2A1P02458 CALR4P-201ENST00000431943 946 ntBASIC18.06■□□□□ 0.48
COL2A1P02458 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC18.06■□□□□ 0.48
COL2A1P02458 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.06■□□□□ 0.48
COL2A1P02458 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC18.06■□□□□ 0.48
COL2A1P02458 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL2A1P02458 KLK11-210ENST00000600362 759 ntTSL 3 BASIC18.06■□□□□ 0.48
COL2A1P02458 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.05■□□□□ 0.48
COL2A1P02458 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
COL2A1P02458 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.05■□□□□ 0.48
COL2A1P02458 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.05■□□□□ 0.48
COL2A1P02458 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.05■□□□□ 0.48
COL2A1P02458 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 POM121L10P-201ENST00000436994 1285 ntBASIC18.05■□□□□ 0.48
COL2A1P02458 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.05■□□□□ 0.48
COL2A1P02458 PPY2P-201ENST00000582808 702 ntBASIC18.05■□□□□ 0.48
COL2A1P02458 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
COL2A1P02458 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.05■□□□□ 0.48
COL2A1P02458 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.05■□□□□ 0.48
COL2A1P02458 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.05■□□□□ 0.48
COL2A1P02458 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL2A1P02458 AL513523.2-202ENST00000427283 2040 ntBASIC18.05■□□□□ 0.48
COL2A1P02458 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms