Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 AC005052.1-201ENST00000625181 2492 ntBASIC21.63■■□□□ 1.05
NPHP4O75161 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.63■■□□□ 1.05
NPHP4O75161 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 AMT-204ENST00000427987 1646 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NPHP4O75161 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
NPHP4O75161 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 RN7SKP175-201ENST00000408472 289 ntBASIC21.63■■□□□ 1.05
NPHP4O75161 AC012362.1-201ENST00000434906 739 ntBASIC21.63■■□□□ 1.05
NPHP4O75161 BUD31-205ENST00000456893 512 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 RN7SL258P-201ENST00000478664 300 ntBASIC21.63■■□□□ 1.05
NPHP4O75161 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP4O75161 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NPHP4O75161 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
NPHP4O75161 MEG3_2.1-201ENST00000611456 105 ntBASIC21.63■■□□□ 1.05
NPHP4O75161 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP4O75161 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
NPHP4O75161 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP4O75161 AC055811.4-201ENST00000624039 1754 ntBASIC21.62■■□□□ 1.05
NPHP4O75161 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
NPHP4O75161 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP4O75161 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP4O75161 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP4O75161 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.62■■□□□ 1.05
NPHP4O75161 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP4O75161 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP4O75161 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP4O75161 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP4O75161 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC21.62■■□□□ 1.05
NPHP4O75161 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC21.62■■□□□ 1.05
NPHP4O75161 CASP16P-204ENST00000635032 809 ntBASIC21.62■■□□□ 1.05
NPHP4O75161 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
NPHP4O75161 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP4O75161 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP4O75161 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC21.61■■□□□ 1.05
NPHP4O75161 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NPHP4O75161 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC21.61■■□□□ 1.05
NPHP4O75161 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
NPHP4O75161 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
NPHP4O75161 AC010141.1-201ENST00000411585 623 ntBASIC21.61■■□□□ 1.05
NPHP4O75161 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC21.61■■□□□ 1.05
NPHP4O75161 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
NPHP4O75161 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC21.61■■□□□ 1.05
NPHP4O75161 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC21.61■■□□□ 1.05
NPHP4O75161 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC21.61■■□□□ 1.05
NPHP4O75161 MIR6858-201ENST00000620733 67 ntBASIC21.61■■□□□ 1.05
NPHP4O75161 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
NPHP4O75161 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 E2F3P2-201ENST00000447755 1422 ntBASIC21.61■■□□□ 1.05
NPHP4O75161 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP4O75161 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP4O75161 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.6■■□□□ 1.05
NPHP4O75161 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP4O75161 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP4O75161 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC21.6■■□□□ 1.05
NPHP4O75161 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC21.6■■□□□ 1.05
NPHP4O75161 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.6■■□□□ 1.05
NPHP4O75161 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP4O75161 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
NPHP4O75161 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP4O75161 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP4O75161 TPM1-223ENST00000560445 485 ntTSL 3 BASIC21.6■■□□□ 1.05
NPHP4O75161 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms