Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.13■□□□□ 0.33
RNF40O75150 MIR6080-201ENST00000617359 66 ntBASIC17.13■□□□□ 0.33
RNF40O75150 AC084121.4-201ENST00000641598 221 ntBASIC17.13■□□□□ 0.33
RNF40O75150 AF228730.8-201ENST00000642140 221 ntBASIC17.13■□□□□ 0.33
RNF40O75150 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
RNF40O75150 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF40O75150 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
RNF40O75150 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
RNF40O75150 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF40O75150 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF40O75150 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF40O75150 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
RNF40O75150 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF40O75150 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF40O75150 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
RNF40O75150 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF40O75150 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF40O75150 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RNF40O75150 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 AC005089.1-201ENST00000619486 2241 ntBASIC17.12■□□□□ 0.33
RNF40O75150 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF40O75150 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF40O75150 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC17.12■□□□□ 0.33
RNF40O75150 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF40O75150 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RNF40O75150 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF40O75150 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.12■□□□□ 0.33
RNF40O75150 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.12■□□□□ 0.33
RNF40O75150 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.12■□□□□ 0.33
RNF40O75150 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 AL035252.4-201ENST00000624174 288 ntBASIC17.12■□□□□ 0.33
RNF40O75150 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.12■□□□□ 0.33
RNF40O75150 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RNF40O75150 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF40O75150 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
RNF40O75150 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 AC139749.1-202ENST00000617529 3139 ntBASIC17.12■□□□□ 0.33
RNF40O75150 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF40O75150 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF40O75150 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF40O75150 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RNF40O75150 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF40O75150 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
RNF40O75150 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF40O75150 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.11■□□□□ 0.33
RNF40O75150 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RNF40O75150 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RNF40O75150 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RNF40O75150 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 HCG4-201ENST00000418983 998 ntBASIC17.11■□□□□ 0.33
RNF40O75150 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF40O75150 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF40O75150 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.11■□□□□ 0.33
RNF40O75150 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.11■□□□□ 0.33
RNF40O75150 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF40O75150 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.11■□□□□ 0.33
RNF40O75150 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF40O75150 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms