Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AC079776.1-201ENST00000401540 1152 ntBASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 TDH-203ENST00000531764 1110 ntBASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 HNRNPUP1-201ENST00000554987 333 ntBASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AL359711.2-201ENST00000563105 872 ntBASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AL512343.1-201ENST00000605837 169 ntBASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 AL391069.4-201ENST00000609583 481 ntBASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDP1Q9Y5B0 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CTDP1Q9Y5B0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.21■□□□□ 0.5
CTDP1Q9Y5B0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AL049840.4-201ENST00000602422 811 ntBASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 AL607033.1-201ENST00000623900 1599 ntBASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 NKILA-202ENST00000614771 2598 ntBASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDP1Q9Y5B0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 BOLA2P3-201ENST00000404566 256 ntBASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CTDP1Q9Y5B0 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms