Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 KRT18P32-201ENST00000424695 1287 ntBASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AL353705.2-201ENST00000428243 662 ntBASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AC005237.2-201ENST00000434368 219 ntBASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 ALG1L8P-201ENST00000533887 760 ntBASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AC112693.3-201ENST00000624819 1983 ntBASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 DBET-201ENST00000630918 3363 ntBASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AC136604.1-201ENST00000418535 575 ntBASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 AC097359.3-201ENST00000603982 1210 ntBASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HIF3AQ9Y2N7 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
HIF3AQ9Y2N7 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms