Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AL354989.2-201ENST00000435838 1540 ntBASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 TPM3P8-201ENST00000330554 643 ntBASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 HIST2H2BC-201ENST00000498492 580 ntBASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 AC018695.7-201ENST00000624587 2492 ntBASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC87Q9NVE4 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC87Q9NVE4 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC87Q9NVE4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC87Q9NVE4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC87Q9NVE4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CCDC87Q9NVE4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC87Q9NVE4 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms