Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 AC027796.2-201ENST00000575326 344 ntBASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMC4Q9NTJ3 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 AC009477.1-201ENST00000452936 217 ntBASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 AC093214.1-201ENST00000511688 1107 ntBASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 AC074044.1-201ENST00000609673 707 ntBASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC4Q9NTJ3 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AC013268.4-201ENST00000637413 2228 ntBASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AC004890.2-204ENST00000481968 304 ntBASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 SLED1-202ENST00000512051 380 ntBASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 SDHAP3-202ENST00000515467 728 ntBASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AC009407.1-201ENST00000568958 598 ntBASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AF228730.6-201ENST00000641497 218 ntBASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AC084121.3-201ENST00000641716 218 ntBASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 MYB-201ENST00000316528 3571 ntTSL 5 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 MYB-241ENST00000616088 3573 ntTSL 5 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC4Q9NTJ3 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMC4Q9NTJ3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC4Q9NTJ3 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC4Q9NTJ3 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
SMC4Q9NTJ3 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms