Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 CTBP2P3-201ENST00000585629 1255 ntBASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 AL035252.4-201ENST00000624174 288 ntBASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 AL645728.2-202ENST00000641679 227 ntBASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 HNRNPA1P48-201ENST00000562726 1377 ntBASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 KRT8P22-201ENST00000562317 1415 ntBASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 SOCS2P1-201ENST00000417727 557 ntBASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 AC098850.1-201ENST00000419919 790 ntBASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 AL049840.4-201ENST00000602422 811 ntBASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 AC239800.4-201ENST00000603712 296 ntBASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4AQ9BY43 INTS4P2-202ENST00000614726 2019 ntBASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AL512384.1-201ENST00000406683 331 ntBASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AC026410.3-201ENST00000514280 936 ntBASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 WFDC1-204ENST00000613603 549 ntBASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4AQ9BY43 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AC007389.4-201ENST00000454674 793 ntBASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.02■□□□□ 0.8
CHMP4AQ9BY43 AC015936.2-201ENST00000593177 259 ntBASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms