Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 AC106028.4-201ENST00000614509 607 ntBASIC17.48■□□□□ 0.39
HPS3Q969F9 AC073592.8-201ENST00000624126 511 ntBASIC17.48■□□□□ 0.39
HPS3Q969F9 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HPS3Q969F9 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 AL109954.1-202ENST00000564051 2148 ntBASIC17.48■□□□□ 0.39
HPS3Q969F9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS3Q969F9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS3Q969F9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
HPS3Q969F9 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HPS3Q969F9 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.47■□□□□ 0.39
HPS3Q969F9 MIR943-201ENST00000401286 94 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.47■□□□□ 0.39
HPS3Q969F9 FAM86GP-201ENST00000448322 971 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.47■□□□□ 0.39
HPS3Q969F9 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.47■□□□□ 0.39
HPS3Q969F9 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 AC025048.3-201ENST00000590609 569 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 LINC01115-203ENST00000606068 577 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 AC005702.4-201ENST00000618393 416 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 AF228730.6-201ENST00000641497 218 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 AC084121.3-201ENST00000641716 218 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.47■□□□□ 0.39
HPS3Q969F9 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 MST1L-201ENST00000442552 2185 ntBASIC17.47■□□□□ 0.39
HPS3Q969F9 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HPS3Q969F9 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HPS3Q969F9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
HPS3Q969F9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.47■□□□□ 0.39
HPS3Q969F9 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS3Q969F9 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.47■□□□□ 0.39
HPS3Q969F9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.46■□□□□ 0.39
HPS3Q969F9 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.46■□□□□ 0.39
HPS3Q969F9 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.46■□□□□ 0.39
HPS3Q969F9 AC006486.2-201ENST00000624246 2199 ntBASIC17.46■□□□□ 0.39
HPS3Q969F9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.46■□□□□ 0.39
HPS3Q969F9 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
HPS3Q969F9 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
HPS3Q969F9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.46■□□□□ 0.39
HPS3Q969F9 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.46■□□□□ 0.39
HPS3Q969F9 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.46■□□□□ 0.39
HPS3Q969F9 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.46■□□□□ 0.39
HPS3Q969F9 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.46■□□□□ 0.39
HPS3Q969F9 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HPS3Q969F9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
HPS3Q969F9 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms