Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AC245100.3-201ENST00000441281 285 ntBASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AC010328.2-201ENST00000597698 1111 ntBASIC15.79■□□□□ 0.12
HMGB4Q8WW32 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AC018892.3-201ENST00000623986 2499 ntBASIC15.79■□□□□ 0.12
HMGB4Q8WW32 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 NKILA-202ENST00000614771 2598 ntBASIC15.78■□□□□ 0.12
HMGB4Q8WW32 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AC097359.3-201ENST00000603982 1210 ntBASIC15.78■□□□□ 0.12
HMGB4Q8WW32 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGB4Q8WW32 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 C2orf27AP3-201ENST00000434123 579 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AC099548.2-209ENST00000480264 625 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AC108725.1-201ENST00000495472 409 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AC079316.1-201ENST00000548397 411 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AC000095.1-201ENST00000603208 874 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AL354718.3-201ENST00000616414 581 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 AC009542.2-202ENST00000619004 1067 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 CR382287.1-201ENST00000623954 586 ntBASIC15.77■□□□□ 0.12
HMGB4Q8WW32 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HMGB4Q8WW32 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.77■□□□□ 0.11
HMGB4Q8WW32 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
HMGB4Q8WW32 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms