Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 SLED1-202ENST00000512051 380 ntBASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX2-3Q8TAU0 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 ELK2AP-201ENST00000392510 1007 ntBASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 BRWD1P1-201ENST00000401091 371 ntBASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 MIR1908-201ENST00000410394 80 ntBASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 AC008735.3-201ENST00000596646 500 ntBASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
NKX2-3Q8TAU0 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 TUBB1P2-201ENST00000422712 1306 ntBASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 TUBB1P1-201ENST00000503144 1300 ntBASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 AL583810.1-201ENST00000553344 1045 ntBASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
NKX2-3Q8TAU0 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms