Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AD000864.1-201ENST00000624076 2295 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SLC25A6P5-201ENST00000435663 894 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 NAA38-207ENST00000576861 556 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC140912.1-201ENST00000577171 1054 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC009118.2-201ENST00000613275 655 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PCDHA14-201ENST00000506751 2298 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PGR-210ENST00000619228 3038 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC098614.1-201ENST00000368528 745 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL512638.1-201ENST00000457493 794 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC093004.1-201ENST00000508850 424 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ZNF767P-206ENST00000513792 565 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 QPRT-203ENST00000562473 579 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 NAA38-206ENST00000576384 424 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RPSAP52-203ENST00000622976 1023 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 EPN3-201ENST00000268933 4071 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 DOC2GP-202ENST00000514950 1163 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 WASH4P-201ENST00000564273 1246 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 MIR4538-201ENST00000581377 78 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC016396.2-201ENST00000562575 1417 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 FLJ38576-201ENST00000623820 2459 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RBM39-205ENST00000397370 612 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL512384.1-201ENST00000406683 331 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 HIST1H2BPS3-201ENST00000419683 341 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL031731.1-201ENST00000642131 2094 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms