Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 PCDHA3-202ENST00000532566 4594 ntBASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AC022144.1-201ENST00000602255 1580 ntBASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NUP54Q7Z3B4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 BTBD7P1-201ENST00000447253 1453 ntBASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 SPCS2P1-201ENST00000561636 679 ntBASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.63□□□□□ -0.07
NUP54Q7Z3B4 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NUP54Q7Z3B4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms