Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.61■□□□□ 0.57
SYNE3Q6ZMZ3 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 HIST3H2BA-201ENST00000436555 524 ntBASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 RN7SL618P-201ENST00000477850 296 ntBASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.6■□□□□ 0.57
SYNE3Q6ZMZ3 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 MIR4313-201ENST00000580760 101 ntBASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SYNE3Q6ZMZ3 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SYNE3Q6ZMZ3 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms