Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 AL035456.1-201ENST00000456064 1369 ntBASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 HLA-J-203ENST00000494367 1087 ntBASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 AL079307.3-201ENST00000556114 283 ntBASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 LINC00628-201ENST00000628516 1289 ntBASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 C18orf15-201ENST00000623680 2534 ntBASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 AC067930.6-201ENST00000623257 4947 ntBASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ZNF549Q6P9A3 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 FO393414.2-201ENST00000405153 598 ntBASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AC069262.1-201ENST00000539058 672 ntBASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 AC023157.3-201ENST00000619086 2088 ntBASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ZNF549Q6P9A3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ZNF549Q6P9A3 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms