Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 POM121L9P-203ENST00000441984 1285 ntBASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 YRDCP1-201ENST00000621419 643 ntBASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 TUBBP5-203ENST00000508529 1334 ntBASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 AL627389.1-201ENST00000413508 1182 ntBASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 PDIA3P2-201ENST00000428073 158 ntBASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 AC006449.5-201ENST00000610658 2098 ntBASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC88AQ3V6T2 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.62
CCDC88AQ3V6T2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 CYP2T1P-202ENST00000641596 2535 ntBASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 AC104784.1-201ENST00000473096 294 ntBASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 AC106820.3-201ENST00000561653 397 ntBASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 AC007663.3-201ENST00000609632 465 ntBASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 AC020763.4-201ENST00000623414 4170 ntBASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC88AQ3V6T2 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AC234782.1-201ENST00000451950 919 ntBASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 AC024909.3-201ENST00000611513 2257 ntBASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC88AQ3V6T2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms