Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
COL4A4P53420 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL4A4P53420 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.54■□□□□ 0.24
COL4A4P53420 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC16.54■□□□□ 0.24
COL4A4P53420 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A4P53420 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A4P53420 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
COL4A4P53420 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.53■□□□□ 0.24
COL4A4P53420 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.53■□□□□ 0.24
COL4A4P53420 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC008267.1-201ENST00000474858 1069 ntBASIC16.53■□□□□ 0.24
COL4A4P53420 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.53■□□□□ 0.24
COL4A4P53420 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.53■□□□□ 0.24
COL4A4P53420 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
COL4A4P53420 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 AC010491.1-201ENST00000563101 2797 ntBASIC16.53■□□□□ 0.24
COL4A4P53420 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.53■□□□□ 0.24
COL4A4P53420 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.53■□□□□ 0.24
COL4A4P53420 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
COL4A4P53420 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 ACKR1-201ENST00000368121 1240 ntBASIC16.53■□□□□ 0.24
COL4A4P53420 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
COL4A4P53420 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.53■□□□□ 0.24
COL4A4P53420 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC16.53■□□□□ 0.24
COL4A4P53420 AL354877.1-201ENST00000424412 413 ntBASIC16.53■□□□□ 0.24
COL4A4P53420 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.53■□□□□ 0.24
COL4A4P53420 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.53■□□□□ 0.24
COL4A4P53420 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL4A4P53420 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.53■□□□□ 0.24
COL4A4P53420 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL4A4P53420 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL4A4P53420 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC16.52■□□□□ 0.24
COL4A4P53420 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.52■□□□□ 0.24
COL4A4P53420 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL4A4P53420 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
COL4A4P53420 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL4A4P53420 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL4A4P53420 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL4A4P53420 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.52■□□□□ 0.24
COL4A4P53420 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
COL4A4P53420 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.52■□□□□ 0.24
COL4A4P53420 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL4A4P53420 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
COL4A4P53420 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL4A4P53420 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL4A4P53420 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL4A4P53420 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
COL4A4P53420 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.52■□□□□ 0.23
COL4A4P53420 GHSR-202ENST00000427970 912 ntBASIC16.52■□□□□ 0.23
COL4A4P53420 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL4A4P53420 AC126915.1-201ENST00000522847 1038 ntBASIC16.52■□□□□ 0.23
COL4A4P53420 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL4A4P53420 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.52■□□□□ 0.23
COL4A4P53420 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL4A4P53420 MIR3907-201ENST00000579424 151 ntBASIC16.52■□□□□ 0.23
COL4A4P53420 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.52■□□□□ 0.23
COL4A4P53420 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.52■□□□□ 0.23
COL4A4P53420 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.52■□□□□ 0.23
COL4A4P53420 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
COL4A4P53420 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
COL4A4P53420 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A4P53420 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.51■□□□□ 0.23
COL4A4P53420 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.51■□□□□ 0.23
COL4A4P53420 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.51■□□□□ 0.23
COL4A4P53420 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms