Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.3■□□□□ 0.36
HTTP42858 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HTTP42858 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.3■□□□□ 0.36
HTTP42858 AC106886.4-201ENST00000623557 2502 ntBASIC17.3■□□□□ 0.36
HTTP42858 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HTTP42858 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC17.3■□□□□ 0.36
HTTP42858 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC17.3■□□□□ 0.36
HTTP42858 AP001527.2-201ENST00000614441 631 ntBASIC17.3■□□□□ 0.36
HTTP42858 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.3■□□□□ 0.36
HTTP42858 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 TBC1D3J-201ENST00000620719 1426 ntBASIC17.3■□□□□ 0.36
HTTP42858 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 AC106794.1-201ENST00000506935 792 ntBASIC17.3■□□□□ 0.36
HTTP42858 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HTTP42858 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC17.29■□□□□ 0.36
HTTP42858 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 RPS9P1-201ENST00000419943 583 ntBASIC17.29■□□□□ 0.36
HTTP42858 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.29■□□□□ 0.36
HTTP42858 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
HTTP42858 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HTTP42858 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
HTTP42858 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 AL359258.3-201ENST00000622910 2331 ntBASIC17.29■□□□□ 0.36
HTTP42858 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 FLJ38576-201ENST00000623820 2459 ntBASIC17.29■□□□□ 0.36
HTTP42858 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HTTP42858 MIR6858-201ENST00000620733 67 ntBASIC17.29■□□□□ 0.36
HTTP42858 KRT8P29-201ENST00000420409 1371 ntBASIC17.29■□□□□ 0.36
HTTP42858 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.29■□□□□ 0.36
HTTP42858 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.28■□□□□ 0.36
HTTP42858 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 AC009955.4-201ENST00000597192 544 ntBASIC17.28■□□□□ 0.36
HTTP42858 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 AC136759.1-202ENST00000530858 2194 ntBASIC17.28■□□□□ 0.36
HTTP42858 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.28■□□□□ 0.36
HTTP42858 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC17.28■□□□□ 0.36
HTTP42858 PIN4P1-201ENST00000451079 396 ntBASIC17.28■□□□□ 0.36
HTTP42858 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.28■□□□□ 0.36
HTTP42858 NAT9-211ENST00000580632 799 ntTSL 3 BASIC17.28■□□□□ 0.36
HTTP42858 DGAT2L7P-201ENST00000602462 744 ntBASIC17.28■□□□□ 0.36
HTTP42858 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.28■□□□□ 0.36
HTTP42858 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HTTP42858 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HTTP42858 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.28■□□□□ 0.36
HTTP42858 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC17.27■□□□□ 0.36
HTTP42858 RCC2P8-201ENST00000502779 1035 ntBASIC17.27■□□□□ 0.36
HTTP42858 NSD1-211ENST00000511258 809 ntTSL 3 BASIC17.27■□□□□ 0.36
HTTP42858 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC17.27■□□□□ 0.36
HTTP42858 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC17.27■□□□□ 0.36
HTTP42858 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms