Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A3P12111 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
COL6A3P12111 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC15.98■□□□□ 0.15
COL6A3P12111 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC15.98■□□□□ 0.15
COL6A3P12111 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A3P12111 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL6A3P12111 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A3P12111 MBLAC2-202ENST00000514906 1936 ntBASIC15.98■□□□□ 0.15
COL6A3P12111 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A3P12111 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A3P12111 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL6A3P12111 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 OR10B1P-201ENST00000601666 907 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.97■□□□□ 0.15
COL6A3P12111 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
COL6A3P12111 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.97■□□□□ 0.15
COL6A3P12111 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.97■□□□□ 0.15
COL6A3P12111 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 TUBB8P12-201ENST00000308911 1335 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 TUBB7P-202ENST00000428444 1305 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 Z69890.1-201ENST00000382990 339 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.97■□□□□ 0.15
COL6A3P12111 AC026320.2-201ENST00000434379 478 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 RN7SL494P-201ENST00000461517 304 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC15.97■□□□□ 0.15
COL6A3P12111 AL512324.3-201ENST00000619383 882 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.97■□□□□ 0.15
COL6A3P12111 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
COL6A3P12111 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 AL109809.1-201ENST00000418979 1367 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC15.97■□□□□ 0.15
COL6A3P12111 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.97■□□□□ 0.15
COL6A3P12111 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
COL6A3P12111 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC15.97■□□□□ 0.15
COL6A3P12111 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.97■□□□□ 0.15
COL6A3P12111 SRP14-204ENST00000558720 780 ntTSL 2 BASIC15.97■□□□□ 0.15
COL6A3P12111 PHBP15-201ENST00000574228 665 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 AC254633.1-201ENST00000606790 345 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 AL358472.3-201ENST00000608147 415 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL6A3P12111 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.97■□□□□ 0.15
COL6A3P12111 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.97■□□□□ 0.15
COL6A3P12111 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.97■□□□□ 0.15
COL6A3P12111 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
COL6A3P12111 MST1L-201ENST00000442552 2185 ntBASIC15.97■□□□□ 0.15
COL6A3P12111 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.96■□□□□ 0.15
COL6A3P12111 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A3P12111 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A3P12111 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A3P12111 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.96■□□□□ 0.15
COL6A3P12111 PUDPP3-201ENST00000445368 636 ntBASIC15.96■□□□□ 0.15
COL6A3P12111 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC15.96■□□□□ 0.15
COL6A3P12111 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC15.96■□□□□ 0.15
COL6A3P12111 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A3P12111 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
COL6A3P12111 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A3P12111 AC106827.1-201ENST00000366454 431 ntBASIC15.96■□□□□ 0.15
COL6A3P12111 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.96■□□□□ 0.15
COL6A3P12111 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.96■□□□□ 0.15
COL6A3P12111 FAM86B3P-203ENST00000523992 854 ntBASIC15.96■□□□□ 0.15
COL6A3P12111 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A3P12111 AC120498.5-201ENST00000561757 299 ntBASIC15.96■□□□□ 0.15
COL6A3P12111 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.96■□□□□ 0.15
COL6A3P12111 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL6A3P12111 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL6A3P12111 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.96■□□□□ 0.14
COL6A3P12111 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
COL6A3P12111 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A3P12111 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A3P12111 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A3P12111 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.95■□□□□ 0.14
COL6A3P12111 AC124068.2-201ENST00000569473 1109 ntBASIC15.95■□□□□ 0.14
COL6A3P12111 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL6A3P12111 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.95■□□□□ 0.14
COL6A3P12111 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL6A3P12111 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A3P12111 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms