Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 RN7SL618P-201ENST00000477850 296 ntBASIC18.22■□□□□ 0.51
CTDNEP1O95476 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 AL158211.3-201ENST00000607385 239 ntBASIC18.22■□□□□ 0.51
CTDNEP1O95476 AC006538.3-201ENST00000612495 578 ntBASIC18.22■□□□□ 0.51
CTDNEP1O95476 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 AGAP7P-201ENST00000582299 2062 ntBASIC18.22■□□□□ 0.51
CTDNEP1O95476 AGAP14-201ENST00000624701 2060 ntBASIC18.22■□□□□ 0.51
CTDNEP1O95476 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.21■□□□□ 0.51
CTDNEP1O95476 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.21■□□□□ 0.51
CTDNEP1O95476 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 AC009407.1-201ENST00000568958 598 ntBASIC18.21■□□□□ 0.51
CTDNEP1O95476 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 AL390955.2-201ENST00000603032 514 ntBASIC18.21■□□□□ 0.51
CTDNEP1O95476 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.21■□□□□ 0.51
CTDNEP1O95476 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTDNEP1O95476 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CTDNEP1O95476 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.21■□□□□ 0.5
CTDNEP1O95476 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CTDNEP1O95476 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.5
CTDNEP1O95476 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDNEP1O95476 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDNEP1O95476 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDNEP1O95476 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTDNEP1O95476 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDNEP1O95476 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDNEP1O95476 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTDNEP1O95476 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 MIR943-201ENST00000401286 94 ntBASIC18.2■□□□□ 0.5
CTDNEP1O95476 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 AC015922.1-201ENST00000421102 1152 ntBASIC18.2■□□□□ 0.5
CTDNEP1O95476 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.2■□□□□ 0.5
CTDNEP1O95476 AC009477.1-201ENST00000452936 217 ntBASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms