Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
SHOX2O60902 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.83■□□□□ 0.12
SHOX2O60902 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHOX2O60902 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SHOX2O60902 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC15.83■□□□□ 0.12
SHOX2O60902 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SHOX2O60902 AC015818.8-201ENST00000587907 1519 ntBASIC15.83■□□□□ 0.12
SHOX2O60902 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHOX2O60902 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.83■□□□□ 0.12
SHOX2O60902 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SHOX2O60902 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
SHOX2O60902 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SHOX2O60902 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.82■□□□□ 0.12
SHOX2O60902 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.82■□□□□ 0.12
SHOX2O60902 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 BX276092.5-203ENST00000456199 560 ntBASIC15.82■□□□□ 0.12
SHOX2O60902 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.82■□□□□ 0.12
SHOX2O60902 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.82■□□□□ 0.12
SHOX2O60902 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SHOX2O60902 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.82■□□□□ 0.12
SHOX2O60902 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.82■□□□□ 0.12
SHOX2O60902 AC016734.2-201ENST00000624325 1377 ntBASIC15.82■□□□□ 0.12
SHOX2O60902 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
SHOX2O60902 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.82■□□□□ 0.12
SHOX2O60902 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.82■□□□□ 0.12
SHOX2O60902 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 AC023090.2-201ENST00000625182 2110 ntBASIC15.82■□□□□ 0.12
SHOX2O60902 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHOX2O60902 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
SHOX2O60902 AC130686.1-201ENST00000622936 2466 ntBASIC15.82■□□□□ 0.12
SHOX2O60902 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SHOX2O60902 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SHOX2O60902 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SHOX2O60902 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.81■□□□□ 0.12
SHOX2O60902 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.81■□□□□ 0.12
SHOX2O60902 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.81■□□□□ 0.12
SHOX2O60902 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 CHCHD2P8-201ENST00000429873 447 ntBASIC15.81■□□□□ 0.12
SHOX2O60902 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SHOX2O60902 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.81■□□□□ 0.12
SHOX2O60902 HAL-202ENST00000538703 2637 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.81■□□□□ 0.12
SHOX2O60902 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.81■□□□□ 0.12
SHOX2O60902 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
SHOX2O60902 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.81■□□□□ 0.12
SHOX2O60902 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.81■□□□□ 0.12
SHOX2O60902 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SHOX2O60902 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.81■□□□□ 0.12
SHOX2O60902 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHOX2O60902 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SHOX2O60902 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.8■□□□□ 0.12
SHOX2O60902 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SHOX2O60902 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.8■□□□□ 0.12
SHOX2O60902 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHOX2O60902 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms