Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMA1Q9UHB6 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.27■□□□□ 0.35
LIMA1Q9UHB6 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIMA1Q9UHB6 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.27■□□□□ 0.35
LIMA1Q9UHB6 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIMA1Q9UHB6 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
LIMA1Q9UHB6 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIMA1Q9UHB6 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 UXT-AS1-201ENST00000590504 1525 ntBASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 AC026396.1-201ENST00000419388 421 ntBASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 ACTG1P14-201ENST00000446382 1122 ntBASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 TIMM8BP1-201ENST00000452384 211 ntBASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 FGD5P1-202ENST00000614866 2498 ntBASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMA1Q9UHB6 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AJ011931.1-201ENST00000618749 2492 ntBASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 YBX2P1-201ENST00000394192 760 ntBASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 RPL5P21-201ENST00000404620 815 ntBASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 BANF1P1-201ENST00000553684 263 ntBASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AC023908.3-201ENST00000564211 3047 ntBASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AL009178.2-201ENST00000597278 2719 ntBASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMA1Q9UHB6 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMA1Q9UHB6 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms