Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 VN2R19P-201ENST00000442399 1052 ntBASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 AC117500.6-201ENST00000624871 588 ntBASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 BNIP3P1-202ENST00000550043 1585 ntBASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 REXO1L1P-202ENST00000608646 1974 ntBASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CCDC28BQ9BUN5 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 IGLL3P-201ENST00000412472 434 ntBASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 AC108751.1-201ENST00000490852 363 ntBASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC28BQ9BUN5 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms