Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
COL12A1Q99715 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.52□□□□□ -0.25
COL12A1Q99715 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL12A1Q99715 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 AC092364.2-201ENST00000596710 2692 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL12A1Q99715 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC13.51□□□□□ -0.25
COL12A1Q99715 TUBB8P8-201ENST00000458717 1058 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 AC100850.1-201ENST00000506768 649 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.51□□□□□ -0.25
COL12A1Q99715 AC018695.6-201ENST00000614011 534 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 PTPN20CP-201ENST00000614090 920 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 AL138799.1-201ENST00000448213 1675 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC13.51□□□□□ -0.25
COL12A1Q99715 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL12A1Q99715 AC004522.1-201ENST00000419978 654 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 AC116345.2-201ENST00000512837 523 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC13.51□□□□□ -0.25
COL12A1Q99715 RBM8B-201ENST00000555532 525 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 AL160314.3-201ENST00000556041 767 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.51□□□□□ -0.25
COL12A1Q99715 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 AC004686.1-201ENST00000605113 538 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 AL592424.1-201ENST00000563624 1536 ntBASIC13.51□□□□□ -0.25
COL12A1Q99715 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL12A1Q99715 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.51□□□□□ -0.25
COL12A1Q99715 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.51□□□□□ -0.25
COL12A1Q99715 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL12A1Q99715 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.5□□□□□ -0.25
COL12A1Q99715 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
COL12A1Q99715 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.5□□□□□ -0.25
COL12A1Q99715 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.5□□□□□ -0.25
COL12A1Q99715 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC13.5□□□□□ -0.25
COL12A1Q99715 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC13.5□□□□□ -0.25
COL12A1Q99715 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 AC005740.2-201ENST00000511085 419 ntBASIC13.5□□□□□ -0.25
COL12A1Q99715 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.5□□□□□ -0.25
COL12A1Q99715 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC13.5□□□□□ -0.25
COL12A1Q99715 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC13.5□□□□□ -0.25
COL12A1Q99715 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
COL12A1Q99715 AC242376.2-201ENST00000619355 883 ntBASIC13.5□□□□□ -0.25
COL12A1Q99715 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 GGT3P-204ENST00000453783 1664 ntBASIC13.5□□□□□ -0.25
COL12A1Q99715 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC13.5□□□□□ -0.25
COL12A1Q99715 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.5□□□□□ -0.25
COL12A1Q99715 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL12A1Q99715 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.5□□□□□ -0.25
COL12A1Q99715 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.5□□□□□ -0.25
COL12A1Q99715 AC073150.1-201ENST00000450406 1084 ntBASIC13.5□□□□□ -0.25
COL12A1Q99715 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.5□□□□□ -0.25
COL12A1Q99715 AC130709.1-201ENST00000484779 1212 ntBASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms