Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 AL162726.2-201ENST00000438986 1017 ntBASIC16.07■□□□□ 0.16
USP39Q53GS9 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
USP39Q53GS9 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.07■□□□□ 0.16
USP39Q53GS9 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
USP39Q53GS9 AC133539.2-201ENST00000604757 467 ntBASIC16.07■□□□□ 0.16
USP39Q53GS9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.07■□□□□ 0.16
USP39Q53GS9 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
USP39Q53GS9 KRT8P22-201ENST00000562317 1415 ntBASIC16.07■□□□□ 0.16
USP39Q53GS9 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.07■□□□□ 0.16
USP39Q53GS9 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.07■□□□□ 0.16
USP39Q53GS9 GGT4P-201ENST00000623672 1708 ntBASIC16.07■□□□□ 0.16
USP39Q53GS9 AC005622.1-201ENST00000636801 1703 ntBASIC16.07■□□□□ 0.16
USP39Q53GS9 PCGF3-213ENST00000620529 1899 ntBASIC16.07■□□□□ 0.16
USP39Q53GS9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
USP39Q53GS9 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
USP39Q53GS9 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
USP39Q53GS9 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.07■□□□□ 0.16
USP39Q53GS9 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.07■□□□□ 0.16
USP39Q53GS9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
USP39Q53GS9 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 GGT3P-204ENST00000453783 1664 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 AC018665.1-201ENST00000622927 1362 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.06■□□□□ 0.16
USP39Q53GS9 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
USP39Q53GS9 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 HIST3H2BA-201ENST00000436555 524 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.06■□□□□ 0.16
USP39Q53GS9 BNIP3P42-201ENST00000454982 569 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 SLC25A47P1-201ENST00000531577 414 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.06■□□□□ 0.16
USP39Q53GS9 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 RN7SL219P-201ENST00000582872 296 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.06■□□□□ 0.16
USP39Q53GS9 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.06■□□□□ 0.16
USP39Q53GS9 BNIP3P29-201ENST00000598302 571 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 AC011447.5-201ENST00000616168 564 ntBASIC16.06■□□□□ 0.16
USP39Q53GS9 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
USP39Q53GS9 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
USP39Q53GS9 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.06■□□□□ 0.16
USP39Q53GS9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
USP39Q53GS9 AL136982.4-201ENST00000437689 1740 ntBASIC16.05■□□□□ 0.16
USP39Q53GS9 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.05■□□□□ 0.16
USP39Q53GS9 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.05■□□□□ 0.16
USP39Q53GS9 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
USP39Q53GS9 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.05■□□□□ 0.16
USP39Q53GS9 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.05■□□□□ 0.16
USP39Q53GS9 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
USP39Q53GS9 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USP39Q53GS9 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.05■□□□□ 0.16
USP39Q53GS9 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.05■□□□□ 0.16
USP39Q53GS9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
USP39Q53GS9 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
USP39Q53GS9 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
USP39Q53GS9 AC245100.3-201ENST00000441281 285 ntBASIC16.05■□□□□ 0.16
USP39Q53GS9 KLF2P4-201ENST00000451959 1225 ntBASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms