Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 HYMAI-201ENST00000635591 3347 ntBASIC14.32□□□□□ -0.12
FOXF1Q12946 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXF1Q12946 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXF1Q12946 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
FOXF1Q12946 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
FOXF1Q12946 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.31□□□□□ -0.12
FOXF1Q12946 MRPS18AP1-201ENST00000414458 589 ntBASIC14.31□□□□□ -0.12
FOXF1Q12946 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.31□□□□□ -0.12
FOXF1Q12946 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.31□□□□□ -0.12
FOXF1Q12946 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.31□□□□□ -0.12
FOXF1Q12946 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.31□□□□□ -0.12
FOXF1Q12946 INGX-202ENST00000489074 768 ntBASIC14.31□□□□□ -0.12
FOXF1Q12946 SLED1-202ENST00000512051 380 ntBASIC14.31□□□□□ -0.12
FOXF1Q12946 RNA5SP421-201ENST00000516864 134 ntBASIC14.31□□□□□ -0.12
FOXF1Q12946 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.31□□□□□ -0.12
FOXF1Q12946 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.31□□□□□ -0.12
FOXF1Q12946 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXF1Q12946 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXF1Q12946 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXF1Q12946 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXF1Q12946 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXF1Q12946 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXF1Q12946 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXF1Q12946 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXF1Q12946 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXF1Q12946 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 AC105917.1-201ENST00000506637 2539 ntBASIC14.3□□□□□ -0.12
FOXF1Q12946 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.3□□□□□ -0.12
FOXF1Q12946 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXF1Q12946 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.3□□□□□ -0.12
FOXF1Q12946 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXF1Q12946 SPDYE18-201ENST00000510091 1050 ntBASIC14.3□□□□□ -0.12
FOXF1Q12946 AC135586.1-201ENST00000539323 574 ntBASIC14.3□□□□□ -0.12
FOXF1Q12946 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXF1Q12946 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.3□□□□□ -0.12
FOXF1Q12946 AC011467.4-201ENST00000594891 528 ntBASIC14.3□□□□□ -0.12
FOXF1Q12946 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.3□□□□□ -0.12
FOXF1Q12946 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXF1Q12946 AC004840.1-201ENST00000636359 365 ntBASIC14.3□□□□□ -0.12
FOXF1Q12946 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.3□□□□□ -0.12
FOXF1Q12946 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXF1Q12946 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.3□□□□□ -0.12
FOXF1Q12946 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
FOXF1Q12946 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms