Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.01■□□□□ 0.47
SMARCA1P28370 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18■□□□□ 0.47
SMARCA1P28370 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SMARCA1P28370 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18■□□□□ 0.47
SMARCA1P28370 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18■□□□□ 0.47
SMARCA1P28370 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 AC134915.1-201ENST00000426461 574 ntBASIC18■□□□□ 0.47
SMARCA1P28370 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18■□□□□ 0.47
SMARCA1P28370 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18■□□□□ 0.47
SMARCA1P28370 ENPP7P5-201ENST00000541031 1031 ntBASIC18■□□□□ 0.47
SMARCA1P28370 CR383656.12-201ENST00000549567 513 ntBASIC18■□□□□ 0.47
SMARCA1P28370 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18■□□□□ 0.47
SMARCA1P28370 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18■□□□□ 0.47
SMARCA1P28370 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18■□□□□ 0.47
SMARCA1P28370 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18■□□□□ 0.47
SMARCA1P28370 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SMARCA1P28370 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SMARCA1P28370 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
SMARCA1P28370 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SMARCA1P28370 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SMARCA1P28370 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
SMARCA1P28370 AC009090.5-201ENST00000624886 2285 ntBASIC17.99■□□□□ 0.47
SMARCA1P28370 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.99■□□□□ 0.47
SMARCA1P28370 RN7SL692P-201ENST00000464677 288 ntBASIC17.99■□□□□ 0.47
SMARCA1P28370 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.99■□□□□ 0.47
SMARCA1P28370 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.99■□□□□ 0.47
SMARCA1P28370 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.99■□□□□ 0.47
SMARCA1P28370 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.99■□□□□ 0.47
SMARCA1P28370 WASH4P-201ENST00000564273 1246 ntBASIC17.99■□□□□ 0.47
SMARCA1P28370 AC124283.3-201ENST00000570869 594 ntBASIC17.99■□□□□ 0.47
SMARCA1P28370 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.99■□□□□ 0.47
SMARCA1P28370 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.99■□□□□ 0.47
SMARCA1P28370 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.99■□□□□ 0.47
SMARCA1P28370 WFDC1-204ENST00000613603 549 ntBASIC17.99■□□□□ 0.47
SMARCA1P28370 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SMARCA1P28370 INTS4P2-202ENST00000614726 2019 ntBASIC17.99■□□□□ 0.47
SMARCA1P28370 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.99■□□□□ 0.47
SMARCA1P28370 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SMARCA1P28370 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.98■□□□□ 0.47
SMARCA1P28370 CU639417.3-201ENST00000624240 1404 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
SMARCA1P28370 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.98■□□□□ 0.47
SMARCA1P28370 AC104457.1-201ENST00000401024 814 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 AP006294.1-201ENST00000415407 339 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 NME2P1-201ENST00000426182 414 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.98■□□□□ 0.47
SMARCA1P28370 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
SMARCA1P28370 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.98■□□□□ 0.47
SMARCA1P28370 AC005225.4-201ENST00000557330 545 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.98■□□□□ 0.47
SMARCA1P28370 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.98■□□□□ 0.47
SMARCA1P28370 AC120045.2-201ENST00000567334 178 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SMARCA1P28370 AC133539.2-201ENST00000604757 467 ntBASIC17.98■□□□□ 0.47
SMARCA1P28370 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.98■□□□□ 0.47
SMARCA1P28370 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms