Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.64■□□□□ 0.25
BDNFP23560 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.64■□□□□ 0.25
BDNFP23560 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
BDNFP23560 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 PRAL-201ENST00000624952 3286 ntBASIC16.64■□□□□ 0.25
BDNFP23560 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.64■□□□□ 0.25
BDNFP23560 AC026691.1-201ENST00000602502 2017 ntBASIC16.63■□□□□ 0.25
BDNFP23560 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.63■□□□□ 0.25
BDNFP23560 CU639417.3-201ENST00000624240 1404 ntBASIC16.63■□□□□ 0.25
BDNFP23560 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.63■□□□□ 0.25
BDNFP23560 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
BDNFP23560 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 RN7SL752P-201ENST00000463779 287 ntBASIC16.63■□□□□ 0.25
BDNFP23560 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
BDNFP23560 CR383656.12-201ENST00000549567 513 ntBASIC16.63■□□□□ 0.25
BDNFP23560 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.63■□□□□ 0.25
BDNFP23560 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
BDNFP23560 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
BDNFP23560 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.63■□□□□ 0.25
BDNFP23560 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
BDNFP23560 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
BDNFP23560 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.62■□□□□ 0.25
BDNFP23560 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
BDNFP23560 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
BDNFP23560 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.62■□□□□ 0.25
BDNFP23560 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 FAM86LP-201ENST00000478302 853 ntBASIC16.62■□□□□ 0.25
BDNFP23560 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.62■□□□□ 0.25
BDNFP23560 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.62■□□□□ 0.25
BDNFP23560 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
BDNFP23560 TMEM261P1-201ENST00000604899 340 ntBASIC16.62■□□□□ 0.25
BDNFP23560 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.62■□□□□ 0.25
BDNFP23560 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.62■□□□□ 0.25
BDNFP23560 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.62■□□□□ 0.25
BDNFP23560 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BDNFP23560 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.62■□□□□ 0.25
BDNFP23560 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
BDNFP23560 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.61■□□□□ 0.25
BDNFP23560 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
BDNFP23560 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
BDNFP23560 INE1-201ENST00000456273 945 ntBASIC16.61■□□□□ 0.25
BDNFP23560 AC092552.1-201ENST00000547243 906 ntBASIC16.61■□□□□ 0.25
BDNFP23560 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 WFDC1-204ENST00000613603 549 ntBASIC16.61■□□□□ 0.25
BDNFP23560 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms