Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TPM1P09493 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.5■□□□□ 0.39
TPM1P09493 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TPM1P09493 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.5■□□□□ 0.39
TPM1P09493 WASH6P-202ENST00000359512 1437 ntBASIC17.5■□□□□ 0.39
TPM1P09493 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
TPM1P09493 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TPM1P09493 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.5■□□□□ 0.39
TPM1P09493 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.5■□□□□ 0.39
TPM1P09493 FAM197Y8-203ENST00000450145 560 ntBASIC17.5■□□□□ 0.39
TPM1P09493 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.5■□□□□ 0.39
TPM1P09493 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.5■□□□□ 0.39
TPM1P09493 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.5■□□□□ 0.39
TPM1P09493 AC002347.1-201ENST00000569543 541 ntBASIC17.5■□□□□ 0.39
TPM1P09493 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.5■□□□□ 0.39
TPM1P09493 TP73-AS1-207ENST00000624167 988 ntBASIC17.5■□□□□ 0.39
TPM1P09493 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.5■□□□□ 0.39
TPM1P09493 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.5■□□□□ 0.39
TPM1P09493 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TPM1P09493 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.49■□□□□ 0.39
TPM1P09493 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.49■□□□□ 0.39
TPM1P09493 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.49■□□□□ 0.39
TPM1P09493 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.49■□□□□ 0.39
TPM1P09493 AC012640.2-201ENST00000561606 901 ntBASIC17.49■□□□□ 0.39
TPM1P09493 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TPM1P09493 AC117500.6-201ENST00000624871 588 ntBASIC17.49■□□□□ 0.39
TPM1P09493 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.49■□□□□ 0.39
TPM1P09493 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
TPM1P09493 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.49■□□□□ 0.39
TPM1P09493 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
TPM1P09493 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TPM1P09493 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
TPM1P09493 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.48■□□□□ 0.39
TPM1P09493 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.48■□□□□ 0.39
TPM1P09493 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.48■□□□□ 0.39
TPM1P09493 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TPM1P09493 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TPM1P09493 AC018712.1-201ENST00000455767 687 ntBASIC17.48■□□□□ 0.39
TPM1P09493 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.48■□□□□ 0.39
TPM1P09493 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.48■□□□□ 0.39
TPM1P09493 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.48■□□□□ 0.39
TPM1P09493 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.48■□□□□ 0.39
TPM1P09493 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms