Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 BCRP2-202ENST00000447763 634 ntBASIC18.53■□□□□ 0.56
HLA-DOAP06340 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 BCRP6-201ENST00000510112 632 ntBASIC18.53■□□□□ 0.56
HLA-DOAP06340 BCRP7-201ENST00000511549 544 ntBASIC18.53■□□□□ 0.56
HLA-DOAP06340 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 AC093813.1-201ENST00000605066 256 ntBASIC18.53■□□□□ 0.56
HLA-DOAP06340 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
HLA-DOAP06340 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DOAP06340 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 DRD5P1-201ENST00000456605 1438 ntBASIC18.52■□□□□ 0.56
HLA-DOAP06340 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 AC119751.2-201ENST00000504529 210 ntBASIC18.52■□□□□ 0.56
HLA-DOAP06340 AP001889.1-201ENST00000525414 633 ntBASIC18.52■□□□□ 0.56
HLA-DOAP06340 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 MIR4259-201ENST00000584466 101 ntBASIC18.52■□□□□ 0.56
HLA-DOAP06340 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 AC107373.2-201ENST00000607735 490 ntBASIC18.52■□□□□ 0.56
HLA-DOAP06340 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 AC005252.2-201ENST00000624630 1141 ntBASIC18.52■□□□□ 0.56
HLA-DOAP06340 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DOAP06340 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.52■□□□□ 0.56
HLA-DOAP06340 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DOAP06340 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DOAP06340 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DOAP06340 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DOAP06340 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.52■□□□□ 0.55
HLA-DOAP06340 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DOAP06340 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.52■□□□□ 0.55
HLA-DOAP06340 LINC02447-202ENST00000501888 2146 ntBASIC18.52■□□□□ 0.55
HLA-DOAP06340 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.55
HLA-DOAP06340 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
HLA-DOAP06340 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.52■□□□□ 0.55
HLA-DOAP06340 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 AC018695.7-201ENST00000624587 2492 ntBASIC18.51■□□□□ 0.55
HLA-DOAP06340 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 PDIA3P1-201ENST00000471856 1510 ntBASIC18.51■□□□□ 0.55
HLA-DOAP06340 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 BAATP1-201ENST00000412284 1225 ntBASIC18.51■□□□□ 0.55
HLA-DOAP06340 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 KLF2P4-201ENST00000451959 1225 ntBASIC18.51■□□□□ 0.55
HLA-DOAP06340 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
HLA-DOAP06340 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms