Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.26■□□□□ 0.19
TOP3BO95985 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.26■□□□□ 0.19
TOP3BO95985 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TOP3BO95985 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC16.26■□□□□ 0.19
TOP3BO95985 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.26■□□□□ 0.19
TOP3BO95985 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.26■□□□□ 0.19
TOP3BO95985 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.26■□□□□ 0.19
TOP3BO95985 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.26■□□□□ 0.19
TOP3BO95985 AP000842.3-202ENST00000569238 1080 ntBASIC16.26■□□□□ 0.19
TOP3BO95985 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.26■□□□□ 0.19
TOP3BO95985 AL138828.2-201ENST00000615812 383 ntBASIC16.26■□□□□ 0.19
TOP3BO95985 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
TOP3BO95985 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TOP3BO95985 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
TOP3BO95985 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.26■□□□□ 0.19
TOP3BO95985 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.26■□□□□ 0.19
TOP3BO95985 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.26■□□□□ 0.19
TOP3BO95985 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
TOP3BO95985 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.26■□□□□ 0.19
TOP3BO95985 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TOP3BO95985 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.26■□□□□ 0.19
TOP3BO95985 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TOP3BO95985 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TOP3BO95985 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TOP3BO95985 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TOP3BO95985 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.25■□□□□ 0.19
TOP3BO95985 CICP13-201ENST00000422015 2789 ntBASIC16.25■□□□□ 0.19
TOP3BO95985 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.25■□□□□ 0.19
TOP3BO95985 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.25■□□□□ 0.19
TOP3BO95985 AC092552.1-201ENST00000547243 906 ntBASIC16.25■□□□□ 0.19
TOP3BO95985 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.25■□□□□ 0.19
TOP3BO95985 AL009183.1-201ENST00000603760 355 ntBASIC16.25■□□□□ 0.19
TOP3BO95985 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.25■□□□□ 0.19
TOP3BO95985 MIR6805-201ENST00000615055 62 ntBASIC16.25■□□□□ 0.19
TOP3BO95985 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 PKD1P5-201ENST00000532415 10291 ntBASIC16.25■□□□□ 0.19
TOP3BO95985 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TOP3BO95985 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.25■□□□□ 0.19
TOP3BO95985 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.24■□□□□ 0.19
TOP3BO95985 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.24■□□□□ 0.19
TOP3BO95985 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TOP3BO95985 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
TOP3BO95985 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TOP3BO95985 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.24■□□□□ 0.19
TOP3BO95985 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TOP3BO95985 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TOP3BO95985 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TOP3BO95985 RNU1-129P-201ENST00000384064 167 ntBASIC16.24■□□□□ 0.19
TOP3BO95985 MIR648-201ENST00000385046 94 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms