Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 PCDHA1-201ENST00000378133 2726 ntBASIC13.31□□□□□ -0.28
ABCA1O95477 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 AL589702.1-201ENST00000641229 1509 ntBASIC13.31□□□□□ -0.28
ABCA1O95477 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.31□□□□□ -0.28
ABCA1O95477 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ABCA1O95477 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA1O95477 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
ABCA1O95477 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
ABCA1O95477 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 AC099336.1-201ENST00000417053 1171 ntBASIC13.3□□□□□ -0.28
ABCA1O95477 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA1O95477 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA1O95477 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA1O95477 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA1O95477 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.3□□□□□ -0.28
ABCA1O95477 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 AL118508.1-201ENST00000613502 2345 ntBASIC13.3□□□□□ -0.28
ABCA1O95477 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
ABCA1O95477 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 RN7SL399P-201ENST00000471648 279 ntBASIC13.3□□□□□ -0.28
ABCA1O95477 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA1O95477 SLC25A47P1-201ENST00000531577 414 ntBASIC13.3□□□□□ -0.28
ABCA1O95477 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA1O95477 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
ABCA1O95477 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 AL139099.5-201ENST00000635274 300 ntBASIC13.3□□□□□ -0.28
ABCA1O95477 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 KRT8P22-201ENST00000562317 1415 ntBASIC13.3□□□□□ -0.28
ABCA1O95477 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
ABCA1O95477 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
ABCA1O95477 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA1O95477 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA1O95477 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 CROCCP4-201ENST00000457096 498 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 AC099548.2-209ENST00000480264 625 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.29□□□□□ -0.28
ABCA1O95477 AL391069.4-201ENST00000609583 481 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 AL022328.1-201ENST00000610050 478 ntBASIC13.29□□□□□ -0.28
ABCA1O95477 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.29□□□□□ -0.28
ABCA1O95477 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA1O95477 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms